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Explainable Deep Learning Models for Anomaly Detection in Encrypted Network Traffic
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Combining advanced AI techniques with explainable DL frameworks provides a suitable and promising solution for network security. Read more about this approach in the article.

calendarSeptember 25, 2025

Explainable Deep Learning Models for Anomaly Detection in Encrypted Network Traffic

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The adoption of encryption protocols such as HTTPS and TLS has enhanced data privacy across networks. Still, some new challenges have made it less effective for cybersecurity experts to rely on traditional anomaly detection methods to identify potential threats, as the traditional anomaly detection techniques broadly depend on inspecting unencrypted payloads. Modern security operations require refined approaches that can detect anomalies in encrypted traffic while providing clear explanations for their decisions. In the past decades, many research studies have been conducted on anomaly detection, and most of them are highly focused on enhancing the accuracy of the detection rather than focusing on the explainability of methods, which leaves practitioners unsatisfied with the explanation of outcomes. As anomaly detection algorithms are increasingly used in safety-oriented domains, they have become an ethical and regulatory requirement since high-stakes decisions are made, which are imperative in those domains. 

Explainable deep learning models have emerged as a crucial solution, combining artificial intelligence's powerful pattern recognition capabilities with the transparency needed for effective cybersecurity operations. It involves applying deep learning concepts to learn patterns from unencrypted metadata and then using XAI (Explainable AI) ways to know the reasons behind anomalous traffic flow and allowing better system validation and debugging. This guide revolves around a comprehensive discussion to understand anomaly detection in encrypted network traffic using explainable deep learning models.


Key Things for Learners to Go Through Before

Before scrolling through this page, here are some of the key concepts that you must have knowledge of for reference so that you can find a deeper and insightful understanding of the page. 

What are explainable deep learning models?

Explainable Deep Learning (XDL) Models generally include techniques and a set of methodologies that help in understanding the internal workings and decision-making processes of a complex deep learning model, also called "Black Boxes." The main agenda is to uncover these models by revealing the most influential feature, how data is propagating through the network, etc. 

What is Explainable Anomaly Detection?

XAD (eXplainable Anomaly Detection) is the extraction of relevant knowledge from an anomaly detection model concerning relationships either contained in data or learned by the model. It means that, instead of a "black box" prediction, an XAD system can identify outliers in datasets (which data features or patterns are unusual) while even providing human-understandable explanations.

What are anomaly detection techniques?

Anomaly detection techniques are generally strategies that recognize data points, activities, or observations that are odd in patterns from the dataset's ordinary behavior. Anomaly detection techniques for encrypted network traffic shift focus from packet payloads to flow-level metadata, using methods such as

  • Statistical Methods: For Example, Z-score, Interquartile Range (IQR), Grubbs' Test, etc.
  • Machine Learning Methods: For example, One-Class SVM, Isolation Forest, K-Nearest Neighbors (KNN), K-Means Clustering, etc.
  • Deep Learning Methods: For example, autoencoders, recurrent neural networks (RNNs), etc.

What is Encrypted Network Traffic?

It is generally data that has been scrambled into an unreadable format. This process is called network encryption, which protects the data from unauthorized parties using different algorithms and keys as it travels across a network. Examples include TLS (Transport Layer Security) and VPNs (Virtual Private Networks). 


Key Technologies in Explainable Anomaly Detection

Some technologies are used to detect any anomaly in a model. Here, numerous algorithms such as Isolation Forest, One-Class SVM, and Autoencoders are used since these are some of the fundamental ones that form the basis of anomaly detection, and for its explainability, there are methods such as SHAP (Shapley Additive Explanations) and LIME (Local Interpretable Model-agnostic Explanations) that come into play since these provide an insight on the highlighting contributing factors plus why there is an anomaly detected. Let's learn these key technologies. 

Anomaly Detection Algorithms

  • Isolation Forest: A machine learning strategy that builds tree structures to isolate anomalies efficiently, where it randomly partitions the data and identifies points that require fewer partitions to be isolated. 
  • One-Class SVM: A support vector machine model that learns the boundary around the normal data points and identifies points outside this boundary as anomalies. 
  • Autoencoders: These are deep learning models that are trained to reconstruct input data, a compressed representation of normal data. It detects the anomaly by using the reconstruction error, which means it struggles to accurately reconstruct them. 
  • Local Outlier Factor (LOF): This is another great technique that compares an object's local density to its neighbors. Based on the comparison, low-density objects are flagged as potential outliers.

Explainability (XAI) Techniques

  • SHAP (Shapley Additive Explanations): It is a model-agnostic technique that assigns a feature an anomaly score by comparing scores with and without the feature. In easy words, it uses game theory for any machine learning model, regardless of its internal structure, and helps in the creation of a linear model from complex ones. 
  • LIME (Local Interpretable Model-agnostic Explanations): It is basically an approximation-based method that points out an explanation for the behavior of complex models around a specific prediction using a simpler and interpretable model.


Understanding Anomaly Detection in Encrypted Network Traffic 

Explainable Deep Learning Models, also known as XDL Models, identify suspicious activities that are deviated from normal behavior without decrypting the main content, and all these are executed by some strategies such as statistical analysis, machine/deep learning, and self-supervised learning to analyze traffic features such as packet size, timing, and flow duration.


Working of Anomaly Detection in Encrypted Network Traffic

The working of anomaly detection in encrypted network traffic can be segmented into four parts, which are as follows.

  1. Feature Extraction: The system extracts features such as packet length distributions, inter-packet arrival times, flow durations, protocol metadata, etc. 
  2. Machine Learning Model: Models such as ET-SSL, CNNs, GRUs, and XGBoost are used with explainable techniques to analyze the network traffic flows. 
  3. Anomaly Scoring and Detection: The respective model assigns an anomaly score to each traffic flow that shows abnormal behaviors from the normal traffic profile.
  4. Continuous Adaptation: To maintain efficiency and effectiveness in dynamic environments, the system periodically updates its understanding with continuous adaptations about normal network traffic by modifying learned normal traffic clusters.


Types of Explainable Deep Learning Models to Detect Anomalies in Encrypted Network Traffic

Generally, the explainable deep learning models can be categorized into two major groups: inherently interpretable models and post-hoc explanation techniques. Let's take a look at these models.

Inherently Interpretable Models (White-Box Models)

  • Linear Models
  • Decision Trees
  • Generalized Additive Models

Post-hoc Explanation Techniques (Black-Box Models)

  • Scope-Based Categorization

    • Local Explanations

    • Global Explanations

  • Method-Based Categorization

    • Model-Agnostic

      • LIME

      • SHAP

      • Permutation Importance

      • Counterfactual Explanations

    • Model-Specific

      • Integrated Gradients

      • CNN visualizations

XDL Models for Detecting Anomalies in Encrypted Network Traffic

  • Recurrent Neural Networks (RNNs) & LSTMs: This is great for time-series network flows, which are basically sequential data that capture temporal dependencies to detect anomalies over time. Their explanations involve critical time stamps that led to anomaly prediction. 
  • Convolutional Neural Networks (CNNs): CNNs are strong at extracting spatial features, and they can be adapted for network traffic data to identify unusual patterns. Their explanations underline the critical features and spatial arrangements that trigger anomaly detection. 
  • Generative Adversarial Networks (GANs): One of the models that can effectively differentiate between normal and abnormal data behaviors, which makes anomaly detection easy. GANs' explanations are derived from the idea of how the discriminator identifies variations from the learned standard data manifold.


Benefits of Explainable Deep Learning Models 

Explainable Deep Learning (XDL) models offer numerous advantages for encrypted network traffic anomaly detection, such as improved trust and transparency, better debugging, and model improvements. They also enhance systems' accountability, allowing security analysts to validate alerts and demystify the root causes of anomalies in the encrypted data. Below are some major pros of Explainable Deep Learning (XDL) models. 

  • Enhanced Transparency: XAI helps users understand the reasoning behind anomaly detection, building confidence in the system using techniques such as SHAP and LIME, which reveal why a model marked certain traffic as anomalous. 
  • Improved Debugging & Validation: Cybersecurity experts can identify model weaknesses and validate their predictions by understanding the importance of features and refining their analysis to reduce false positives and enhance detection accuracy.
  • Better Threat Intelligence and Adaptability: Explanations help analysts focus on critical anomalies, leading to more efficient security operations. Deep learning models can detect novel threats by learning from vast amounts of data and adapting to evolving attack patterns. 
  • Validation of Model Decisions: With XAI, security analysts are allowed to validate the reasoning behind a detected anomaly. It helps them to identify whether the model is catching genuine threats or misinterpreting normal patterns.


How Explainable Deep Learning Models Improve Anomaly Detection in Encrypted Network Traffic

The XDL model can improve anomaly detection in encrypted network traffic in numerous ways. The central concept is understanding why a model flags specific traffic as anomalous, aiding debugging, and facilitating quicker response. Here are some key pointers that you must learn.

  • Increases transparency and trust: Analysts must learn the "why" behind a model's decision when a model returns with an output, and XAI explains it very well. XDL improves anomaly detection by building confidence and trust since high stakes are involved.
  • Debugging and Model Improvement: XDL models help analysts and cybersecurity experts identify weaknesses or biases in the model, allowing them to understand influencing factors and leading to better model performance. 
  • Boosts Operational Efficiency: It pinpoints some of the most critical features or anomalies that security experts can focus on. For example, explanations given by XAI help distinguish between truly malicious activity and gentle traffic, significantly reducing false alarm rates and saving time and resources. 
  • Enabling Detection of Novel Threats: XAI provides insights that are further used to uncover sophisticated and unknown attacks, which potential signature-based methods generally miss.


Real-World Applications of Explainable Deep Learning Models for Anomaly Detection

Explainable deep learning models are used to detect anomalous behavior in data and network traffic in several real-world applications, where the root cause is as critical as the detection. XAI (Explainable AI) techniques are integrated with the DL models and can provide easy-to-understand justifications for the predictions, making them more effective and trustworthy. Let's look at some real-world cases where explainable deep learning models are being used to detect anomalies. 

  • Financial Fraud Detection: XAI plays a critical role in detecting fraud in finance and building trust. It follows regulatory norms such as GDPR's right to explanation and supports analysts by detecting suspicious activities, changes in spending patterns, unusually large transactions, unauthorized account access, etc. The most common techniques include SHAP and LIME. 
  • Cybersecurity and intrusion detection: XAI with deep learning models shows clear insights about the network and system behavior and helps the cybersecurity experts to understand and respond to potential threats using Intrusion Detection Systems and malware detection. 
  • Industrial and manufacturing fault diagnosis: XAI helps to identify and rectify issues in real time by finding and analyzing the root cause behind the abnormality and optimizing production and improving overall quality. Methods like SHAP are widely accepted for revealing the most influential sensor features and detecting manufacturing faults. 
  • Medical imaging and healthcare monitoring: XAI helps detect anomalies in medical imaging and healthcare diagnostics. It uses saliency maps, attention mechanisms, and Grad-CAM technologies as key tools in identifying subtle abnormalities, showing them to clinicians as heatmaps (for visuals), and making the AI model focus on diagnosis.
  • Autonomous vehicles and vehicular networks: An LSTM autoencoder monitors sensor data from the vehicle's GPS, IMU, and CAN bus. When an anomaly is detected, the SHAP technique identifies and performs a quick diagnosis.


Final Thoughts

The combination of advanced AI techniques with explainability frameworks offers a promising solution for addressing the evolving challenges of network security, where explainable deep learning models represent a significant advancement in network security capabilities, providing the accuracy to detect sophisticated threats while maintaining the transparency required for effective security operations. As encryption continues to rise across all forms of digital communication, these approaches will become increasingly essential for maintaining robust cybersecurity postures. Here in this provided content, you have found a comprehensive approach to understanding everything about explainable deep learning models for anomaly detection in encrypted network traffic, including benefits, real-world applications, key technologies, and more.